A Transcriptomics Analysis

A Transcriptomics Analysis

Transcriptomics field studies human transcriptome, in other words human RNA. RNA is related to gene expression. In this project we analyze mus musculus on 3 different diets and generate results for gene expression and effects of this gene expression on biological pathways and gene sets from raw transcript data which is ~40GB. We use kallisto for quantification, deseq2 for Differential Expression Analysis, piano for Functional Analysis.

Poster: https://drive.google.com/file/d/19nJQxs5QAcnXuzALnW8gvlOssZlMf8YN/view?usp=sharing

Video: https://drive.google.com/file/d/1x-015QlGXI-Pio3PUauNxCLrrQbz3yug/view?usp=sharing

Project Members: 

Ömer Faruk Özdemir

Project Advisor: 

Taflan Gündem

Project Status: 

Project Year: 

  • Spring

Contact us

Department of Computer Engineering, Boğaziçi University,
34342 Bebek, Istanbul, Turkey

  • Phone: +90 212 359 45 23/24
  • Fax: +90 212 2872461

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